All Classes
AlignmentParameter
Arithmetic
BatchAlignPipe
BinaryBlock
Block
CandidateBlock
DefaultParam
FastPipe
FastqUnitBuffer
FileManager
HelpParam
HitInfo
InfoDumper
InfoLogger
InfoManager
InputFileManager
JavaSerializer
KmerLoc
kryoSerializer
Main
MainOfChisquareTester
MainOfCluster
MainOfConverter
MainOfCorrelationer
MainOfDecompresser
MainOfMapper
MainOfParallelizer
MainOfPiper
MainOfReductioner
MainOfRegressioner
MainOfReporter
MainOfStatisticer
MainOfVariantCaller
NGSfileUnitBuffer
ObjectFileInput
ObjectFileOutput
OnePipe
OutputFileManager
Parameter
ParameterForChisquareTester
ParameterForCluster
ParameterForConverter
ParameterForCorrelationer
ParameterForDecompresser
ParameterForMapper
ParameterForParallelizer
ParameterForReductioner
ParameterForRegressioner
ParameterForReporter
ParameterForScriptPiper
ParameterForStatisticer
ParameterForVariantCaller
Pipeline
Pipelines
Qgram
QgramComparator
ReadFasta
ReadFastq
readInfo
ReadInfo
RefInfo
RefIOManager
RefManager
RefSerializer
RefStructBuilder
RefStructManager
RefStructSerializer
RefTitle
ScoreMatrix
ShAlgorithm
ShJavaSerializer
ShKryoSerializer
ShMatrix
ShSerializer
SparkBamPipe
SparkChiSquarePipe
SparkClusterPipe
SparkConvertPipe
SparkCorrelationPipe
SparkDecompressPipe
SparkHWEPipe
SparkKryoRegistrator
SparkParallelPipe
SparkPipe
SparkReductionPipe
SparkRegressionPipe
SparkReportPipe
SparkScriptPipe
Statistic
TextFileBufferInput
TextFileBufferOutput