uni.bielefeld.cmg.reflexiv.io

Class TextFileBufferInput

java.lang.Object

uni.bielefeld.cmg.reflexiv.io.TextFileBufferInput

All Implemented Interfaces:

FileManager, InputFileManager

public class TextFileBufferInput
extends java.lang.Object
implements InputFileManager

Returns an object for buffering input files. This class is used in local mode only. For cluster mode, Spark "textFile" function is used to access input Fastq file.

See Also:

Field Summary

Fields

Modifier and Type	Field and Description
java.io.BufferedReader	inputBufferReader
java.io.FileInputStream	inputFileStream
java.io.InputStreamReader	inputStreamReader

Constructor Summary

Constructors

Constructor and Description
TextFileBufferInput() A constructor that construct an object of TextFileBufferInput class.

Method Summary

Methods

Modifier and Type	Method and Description
void	bufferInputFile(java.lang.String inputFile) This method sets up an input file buffer based on an input file path.
void	bufferOutputFile(java.lang.String OutputFile) This method sets up an output file buffer based on an output file path.
void	checkFile(java.lang.String cFile) This method checks the path of an input file.
java.io.BufferedReader	getBufferReader() Returns the preset BufferedReader.
java.io.FileInputStream	getInputFileStream() Returns the preset FileInputStream.
java.io.InputStreamReader	getInputStreamReader() Returns the preset InputStreamReade.
void	setBufferReader() This method sets the BufferedReader based on the preset InputStreamReader.
void	setInput(java.lang.String inputFile) This method sets up an input file stream for an input file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

inputFileStream

public java.io.FileInputStream inputFileStream

inputStreamReader

public java.io.InputStreamReader inputStreamReader

inputBufferReader

public java.io.BufferedReader inputBufferReader

Constructor Detail

TextFileBufferInput

public TextFileBufferInput()

A constructor that construct an object of TextFileBufferInput class. No constructor option needed.

Method Detail

getBufferReader

public java.io.BufferedReader getBufferReader()

Returns the preset BufferedReader.

Returns:

BufferedReader.

getInputStreamReader

public java.io.InputStreamReader getInputStreamReader()

Returns the preset InputStreamReade.

Returns:

InputStreamReader.

getInputFileStream

public java.io.FileInputStream getInputFileStream()

Returns the preset FileInputStream.

Returns:

FileInputStream.

setBufferReader

public void setBufferReader()

This method sets the BufferedReader based on the preset InputStreamReader.

checkFile

public void checkFile(java.lang.String cFile)

This method checks the path of an input file. It classifies the location (via URL) of an input file.

Parameters:

cFile - the full

setInput

public void setInput(java.lang.String inputFile)

This method sets up an input file stream for an input file.

Parameters:

inputFile - the full path of an input file.

bufferInputFile

public void bufferInputFile(java.lang.String inputFile)

This method sets up an input file buffer based on an input file path.

Specified by:

bufferInputFile in interface FileManager

Specified by:

bufferInputFile in interface InputFileManager

Parameters:

inputFile - is the input text file in String

bufferOutputFile

public void bufferOutputFile(java.lang.String OutputFile)

This method sets up an output file buffer based on an output file path.

Specified by:

bufferOutputFile in interface FileManager

Specified by:

bufferOutputFile in interface InputFileManager

Parameters:

OutputFile -