uni.bielefeld.cmg.reflexiv.io

Class TextFileBufferOutput

java.lang.Object

uni.bielefeld.cmg.reflexiv.io.TextFileBufferOutput

All Implemented Interfaces:

FileManager, OutputFileManager

public class TextFileBufferOutput
extends java.lang.Object
implements OutputFileManager

Returns an object for buffering output files. This class is used in local mode only. For cluster mode, Spark "textFile" function is used to access input Fastq file.

See Also:

Field Summary

Fields

Modifier and Type	Field and Description
java.io.BufferedWriter	outputBufferWriter
java.io.FileOutputStream	outputFileStream
java.io.File	outputPath
java.io.OutputStreamWriter	outputStreamWriter
java.lang.String	path

Constructor Summary

Constructors

Constructor and Description
TextFileBufferOutput() A constructor that construct an object of TextFileBufferOutput class.

Method Summary

Methods

Modifier and Type	Method and Description
void	bufferInputFile(java.lang.String inputFile) This method sets up an input file buffer based on an input file path.
void	bufferOutputFile(java.lang.String outputFile) This method sets up an output file buffer based on an output file path.
java.io.BufferedWriter	getOutputBufferWriter() Returns the preset BufferedWriter.
java.io.FileOutputStream	getOutputFileStream() Returns the preset FileOutputStream.
java.io.OutputStreamWriter	getOutputStreamWriter() Returns the preset OutputStreamWriter.
void	setBufferWriter() set class BufferWriter object outputBufferWriter
void	setFileOutputStream(boolean overwrite) set class FileOutputStream object outputFileStream.
void	setOutput(java.lang.String outputFile, boolean overwrite) This method sets up an output file stream for an output file.
void	setOutputStreamWriter() set class OutputStreamWriter object outputStreamWriter.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

path

public java.lang.String path

outputPath

public java.io.File outputPath

outputFileStream

public java.io.FileOutputStream outputFileStream

outputStreamWriter

public java.io.OutputStreamWriter outputStreamWriter

outputBufferWriter

public java.io.BufferedWriter outputBufferWriter

Constructor Detail

TextFileBufferOutput

public TextFileBufferOutput()

A constructor that construct an object of TextFileBufferOutput class. No constructor option needed.

Method Detail

getOutputBufferWriter

public java.io.BufferedWriter getOutputBufferWriter()

Returns the preset BufferedWriter.

Returns:

return BufferedWriter for output text.

getOutputStreamWriter

public java.io.OutputStreamWriter getOutputStreamWriter()

Returns the preset OutputStreamWriter.

Returns:

OutputStreamWriter.

getOutputFileStream

public java.io.FileOutputStream getOutputFileStream()

Returns the preset FileOutputStream.

Returns:

FileOutputStream.

setBufferWriter

public void setBufferWriter()

set class BufferWriter object outputBufferWriter

setOutputStreamWriter

public void setOutputStreamWriter()

set class OutputStreamWriter object outputStreamWriter.

setFileOutputStream

public void setFileOutputStream(boolean overwrite)

set class FileOutputStream object outputFileStream.

Parameters:

overwrite - stands for whether overwrite the output file or not.

setOutput

public void setOutput(java.lang.String outputFile,
             boolean overwrite)

This method sets up an output file stream for an output file.

Parameters:

outputFile - the full path of an output file.

overwrite - whether to overwrite the existing file or not.

bufferOutputFile

public void bufferOutputFile(java.lang.String outputFile)

This method sets up an output file buffer based on an output file path.

Specified by:

bufferOutputFile in interface FileManager

Specified by:

bufferOutputFile in interface OutputFileManager

Parameters:

outputFile - the full path of an output file.

bufferInputFile

public void bufferInputFile(java.lang.String inputFile)

This method sets up an input file buffer based on an input file path.

Specified by:

bufferInputFile in interface FileManager

Specified by:

bufferInputFile in interface OutputFileManager

Parameters:

inputFile - the full path of an input file.