Packages

Package	Description
uni.bielefeld.cmg.sparkhit.algorithm	This package contains different classes for varies algorithms.
uni.bielefeld.cmg.sparkhit.io	This package contains different classes for data I/O.
uni.bielefeld.cmg.sparkhit.main	This package contains all main classes for different applications.
uni.bielefeld.cmg.sparkhit.matrix	This package contains different matrices for sequence alignment.
uni.bielefeld.cmg.sparkhit.pipeline	This package contains different pipelines for Sparkhit applications.
uni.bielefeld.cmg.sparkhit.reference	This package is used for building reference indexes for reference genomes.
uni.bielefeld.cmg.sparkhit.serializer	This package contains different classes for object serialization.
uni.bielefeld.cmg.sparkhit.struct	This package contains different classes as data structures used for sequence alignment.
uni.bielefeld.cmg.sparkhit.util	This package contains different classes for utilities such as option parsing and information displaying.