- readClassNotFoundException(ClassNotFoundException) - Method in class uni.bielefeld.cmg.reflexiv.util.InfoDumper
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This method records a ClassNotFoundException message.
- readClassNotFoundException(ClassNotFoundException) - Method in class uni.bielefeld.cmg.reflexiv.util.InfoLogger
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This method records a ClassNotFoundException message.
- readClassNotFoundException(ClassNotFoundException) - Method in interface uni.bielefeld.cmg.reflexiv.util.InfoManager
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This is an abstract method for recording ClassNotFoundException messages.
- ReadFasta - Class in uni.bielefeld.cmg.reflexiv.io
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Returns an object for buffering input fasta files.
- ReadFasta() - Constructor for class uni.bielefeld.cmg.reflexiv.io.ReadFasta
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A constructor that construct an object of
ReadFasta class.
- readFileNotFoundException(FileNotFoundException) - Method in class uni.bielefeld.cmg.reflexiv.util.InfoDumper
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This method records a FileNotFoundException message.
- readFileNotFoundException(FileNotFoundException) - Method in class uni.bielefeld.cmg.reflexiv.util.InfoLogger
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This method records a FileNotFoundException message.
- readFileNotFoundException(FileNotFoundException) - Method in interface uni.bielefeld.cmg.reflexiv.util.InfoManager
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This is an abstract method for recording FileNotFoundException messages.
- readIOException(IOException) - Method in class uni.bielefeld.cmg.reflexiv.util.InfoDumper
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This method records an IOException message.
- readIOException(IOException) - Method in class uni.bielefeld.cmg.reflexiv.util.InfoLogger
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This method records an IOException message.
- readIOException(IOException) - Method in interface uni.bielefeld.cmg.reflexiv.util.InfoManager
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This is an abstract method for recording IOException messages.
- readMessage(String) - Method in class uni.bielefeld.cmg.reflexiv.util.InfoDumper
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This method records a specified message.
- readMessage(String) - Method in class uni.bielefeld.cmg.reflexiv.util.InfoLogger
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This method records a specified message.
- readMessage(String) - Method in interface uni.bielefeld.cmg.reflexiv.util.InfoManager
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This is an abstract method for recording specified messages.
- readParagraphedMessages(String) - Method in class uni.bielefeld.cmg.reflexiv.util.InfoDumper
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This method records a paragraph of message.
- reflexivContigList - Variable in class uni.bielefeld.cmg.reflexiv.io.ContigReader
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- ReflexivCounter - Class in uni.bielefeld.cmg.reflexiv.pipeline
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Returns an object for running the Reflexiv counter pipeline.
- ReflexivCounter() - Constructor for class uni.bielefeld.cmg.reflexiv.pipeline.ReflexivCounter
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- reflexivCounterPipe() - Method in class uni.bielefeld.cmg.reflexiv.pipeline.Pipelines
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This method starts the Reflexiv counter pipeline
- ReflexivMain - Class in uni.bielefeld.cmg.reflexiv.pipeline
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Returns an object for running the Reflexiv main pipeline.
- ReflexivMain() - Constructor for class uni.bielefeld.cmg.reflexiv.pipeline.ReflexivMain
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- reflexivMainPipe() - Method in class uni.bielefeld.cmg.reflexiv.pipeline.Pipelines
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This method starts the Reflexiv run pipeline
- ReflexivMainTest - Class in uni.bielefeld.cmg.reflexiv.pipeline
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Created by Liren Huang on 21.11.17.
- ReflexivMainTest() - Constructor for class uni.bielefeld.cmg.reflexiv.pipeline.ReflexivMainTest
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- ReflexivReAssembler - Class in uni.bielefeld.cmg.reflexiv.pipeline
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Returns an object for running the Reflexiv reassembler pipeline.
- ReflexivReAssembler() - Constructor for class uni.bielefeld.cmg.reflexiv.pipeline.ReflexivReAssembler
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- reflexivReAssemblerPipe() - Method in class uni.bielefeld.cmg.reflexiv.pipeline.Pipelines
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This method starts the Reflexiv reassembler pipeline
- registerClasses(Kryo) - Method in class uni.bielefeld.cmg.reflexiv.serializer.SparkKryoRegistrator
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This method registers all classes that are going to be serialized by kryo