- bubble - Variable in class uni.bielefeld.cmg.reflexiv.util.DefaultParam
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- bufferInputFile(String) - Method in interface uni.bielefeld.cmg.reflexiv.io.FileManager
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This is an abstract method for buffering input stream of input files.
- bufferInputFile(String) - Method in interface uni.bielefeld.cmg.reflexiv.io.InputFileManager
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This is an abstract method for buffering input stream of input files.
- bufferInputFile(String) - Method in interface uni.bielefeld.cmg.reflexiv.io.OutputFileManager
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This is an abstract method for buffering input stream of input files.
- bufferInputFile(String) - Method in class uni.bielefeld.cmg.reflexiv.io.ReadFasta
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This method sets up an input fasta file stream based on an input file path.
- bufferInputFile(String) - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferInput
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This method sets up an input file buffer based on an input file path.
- bufferInputFile(String) - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferOutput
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This method sets up an input file buffer based on an input file path.
- bufferOutputFile(String) - Method in interface uni.bielefeld.cmg.reflexiv.io.FileManager
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This is an abstract method for buffering input stream of output files.
- bufferOutputFile(String) - Method in interface uni.bielefeld.cmg.reflexiv.io.InputFileManager
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This is an abstract method for buffering output stream of output files.
- bufferOutputFile(String) - Method in interface uni.bielefeld.cmg.reflexiv.io.OutputFileManager
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This is an abstract method for buffering output stream of output files.
- bufferOutputFile(String) - Method in class uni.bielefeld.cmg.reflexiv.io.ReadFasta
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This method sets the full path of an output file.
- bufferOutputFile(String) - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferInput
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This method sets up an output file buffer based on an output file path.
- bufferOutputFile(String) - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferOutput
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This method sets up an output file buffer based on an output file path.