- i - Variable in class uni.bielefeld.cmg.reflexiv.pipeline.ReflexivMainTest
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- importCommandLine() - Method in class uni.bielefeld.cmg.reflexiv.util.Parameter
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This method parses input commandline arguments and sets correspond
parameters.
- importCommandLine() - Method in class uni.bielefeld.cmg.reflexiv.util.ParameterOfCounter
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This method parses input commandline arguments and sets correspond
parameters.
- importCommandLine() - Method in class uni.bielefeld.cmg.reflexiv.util.ParameterOfReAssembler
-
This method parses input commandline arguments and sets correspond
parameters.
- InfoDumper - Class in uni.bielefeld.cmg.reflexiv.util
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Returns an object for printing messages in a structured format to the screen.
- InfoDumper() - Constructor for class uni.bielefeld.cmg.reflexiv.util.InfoDumper
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- InfoLogger - Class in uni.bielefeld.cmg.reflexiv.util
-
Returns an object for logging messages in a structured format.
- InfoLogger() - Constructor for class uni.bielefeld.cmg.reflexiv.util.InfoLogger
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- InfoManager - Interface in uni.bielefeld.cmg.reflexiv.util
-
This is an interface for managing program information.
- inputBufferReader - Variable in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferInput
-
- inputContigPath - Variable in class uni.bielefeld.cmg.reflexiv.util.DefaultParam
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- inputFaPath - Variable in class uni.bielefeld.cmg.reflexiv.util.DefaultParam
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- InputFileManager - Interface in uni.bielefeld.cmg.reflexiv.io
-
This is an interface for managing input files via different input
buffers.
- inputFileStream - Variable in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferInput
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- inputFqPath - Variable in class uni.bielefeld.cmg.reflexiv.util.DefaultParam
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- inputKmerPath - Variable in class uni.bielefeld.cmg.reflexiv.util.DefaultParam
-
- inputStreamReader - Variable in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferInput
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