- getBufferReader() - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferInput
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Returns the preset BufferedReader.
- getContigIDArray() - Method in class uni.bielefeld.cmg.reflexiv.io.ContigReader
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not ready yet
- getContigIDTable() - Method in class uni.bielefeld.cmg.reflexiv.io.ContigReader
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under construction
- getFastaBufferedReader() - Method in class uni.bielefeld.cmg.reflexiv.io.ReadFasta
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This method sets the BufferedReader.
- getInputFileStream() - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferInput
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Returns the preset FileInputStream.
- getInputStreamReader() - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferInput
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Returns the preset InputStreamReade.
- getOutputBufferWriter() - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferOutput
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Returns the preset BufferedWriter.
- getOutputFileStream() - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferOutput
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Returns the preset FileOutputStream.
- getOutputStreamWriter() - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferOutput
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Returns the preset OutputStreamWriter.
- getPrimerArray() - Method in class uni.bielefeld.cmg.reflexiv.io.ContigReader
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This method returns an Array of String for searching re-assembled contigs
- getReflexivContigList() - Method in class uni.bielefeld.cmg.reflexiv.io.ContigReader
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This method returns a List of Reflexible K-mers that represents contigs