A B C D E F G H I K L M O P R S T U V

C

cache - Variable in class uni.bielefeld.cmg.reflexiv.util.DefaultParam

checkFile(String) - Method in class uni.bielefeld.cmg.reflexiv.io.ReadFasta

This method checks the path of an input fasta file.

checkFile(String) - Method in class uni.bielefeld.cmg.reflexiv.io.TextFileBufferInput

This method checks the path of an input file.

contigIDArray - Variable in class uni.bielefeld.cmg.reflexiv.io.ContigReader

contigIDTable - Variable in class uni.bielefeld.cmg.reflexiv.io.ContigReader

contigPrimerTable - Variable in class uni.bielefeld.cmg.reflexiv.io.ContigReader

ContigReader - Class in uni.bielefeld.cmg.reflexiv.io

Returns an object for reading contigs in the Fasta format.

ContigReader() - Constructor for class uni.bielefeld.cmg.reflexiv.io.ContigReader

createInputFastaStream(String) - Method in class uni.bielefeld.cmg.reflexiv.io.ReadFasta

This method sets up an input file stream for an input fasta file.

A B C D E F G H I K L M O P R S T U V