- kmerBits - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- kmerHits - Variable in class uni.bielefeld.cmg.sparkhit.struct.AlignmentParameter
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- KmerLoc - Class in uni.bielefeld.cmg.sparkhit.struct
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A data structure class that stores the loci of all k-mers on the reference genome.
- KmerLoc() - Constructor for class uni.bielefeld.cmg.sparkhit.struct.KmerLoc
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A constructor that construct an object of
KmerLoc class.
- kmerOverlap - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- kmers - Variable in class uni.bielefeld.cmg.sparkhit.struct.AlignmentParameter
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- kmerSize - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- kryoDeserialization() - Method in class uni.bielefeld.cmg.sparkhit.reference.RefStructSerializer
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This method de-serializes all reference indices using kryo serializer.
- kryoDeSerialization(String) - Method in class uni.bielefeld.cmg.sparkhit.serializer.JavaSerializer
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Return the input object from input deserialization stream.
- kryoDeSerialization(Class, String) - Method in class uni.bielefeld.cmg.sparkhit.serializer.kryoSerializer
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Return the input object that is going to be deserialized.
- kryoDeSerialization(String) - Method in interface uni.bielefeld.cmg.sparkhit.serializer.ShJavaSerializer
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This is an abstract method for kryo de-serialization.
- kryoDeSerialization(Class, String) - Method in interface uni.bielefeld.cmg.sparkhit.serializer.ShKryoSerializer
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This is an abstract method for kryo de-serialization.
- kryoDeSerialization(Class, String) - Method in interface uni.bielefeld.cmg.sparkhit.serializer.ShSerializer
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This is an abstract method for kryo de-serialization.
- kryoSerialization() - Method in class uni.bielefeld.cmg.sparkhit.reference.RefStructSerializer
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This method serializes reference indices using kryo serializer.
- kryoSerialization(Object, String) - Method in class uni.bielefeld.cmg.sparkhit.serializer.JavaSerializer
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This method serializes an object using kryo serializer.
- kryoSerialization(Object, String, int) - Method in class uni.bielefeld.cmg.sparkhit.serializer.kryoSerializer
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This method serializes an object to an assigned file using kryo serializer.
- kryoSerialization(Object, String) - Method in interface uni.bielefeld.cmg.sparkhit.serializer.ShJavaSerializer
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This is an abstract method for kryo serialization.
- kryoSerialization(Object, String, int) - Method in interface uni.bielefeld.cmg.sparkhit.serializer.ShKryoSerializer
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This is an abstract method for kryo serialization.
- kryoSerialization(Object, String, int) - Method in interface uni.bielefeld.cmg.sparkhit.serializer.ShSerializer
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This is an abstract method for kryo serialization.
- kryoSerializer - Class in uni.bielefeld.cmg.sparkhit.serializer
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Returns an object for serializing objects using kryo serializer.
- kryoSerializer() - Constructor for class uni.bielefeld.cmg.sparkhit.serializer.kryoSerializer
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