- uni.bielefeld.cmg.sparkhit.algorithm - package uni.bielefeld.cmg.sparkhit.algorithm
-
This package contains different classes for varies algorithms.
- uni.bielefeld.cmg.sparkhit.io - package uni.bielefeld.cmg.sparkhit.io
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This package contains different classes for data I/O.
- uni.bielefeld.cmg.sparkhit.main - package uni.bielefeld.cmg.sparkhit.main
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This package contains all main classes for different applications.
- uni.bielefeld.cmg.sparkhit.matrix - package uni.bielefeld.cmg.sparkhit.matrix
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This package contains different matrices for sequence alignment.
- uni.bielefeld.cmg.sparkhit.pipeline - package uni.bielefeld.cmg.sparkhit.pipeline
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This package contains different pipelines for Sparkhit applications.
- uni.bielefeld.cmg.sparkhit.reference - package uni.bielefeld.cmg.sparkhit.reference
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This package is used for building reference indexes for reference genomes.
- uni.bielefeld.cmg.sparkhit.serializer - package uni.bielefeld.cmg.sparkhit.serializer
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This package contains different classes for object serialization.
- uni.bielefeld.cmg.sparkhit.struct - package uni.bielefeld.cmg.sparkhit.struct
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This package contains different classes as data structures used for
sequence alignment.
- uni.bielefeld.cmg.sparkhit.util - package uni.bielefeld.cmg.sparkhit.util
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This package contains different classes for utilities such as option parsing
and information displaying.