- Main - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for runnning
Sparkhit-recruiter.
- Main() - Constructor for class uni.bielefeld.cmg.sparkhit.main.Main
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- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.Main
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Main Java method specified in the Manifest file for Sparkhit-recruiter.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfChisquareTester
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfCluster
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfConverter
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfCorrelationer
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfDecompresser
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfMapper
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfParallelizer
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfPiper
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfReductioner
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfRegressioner
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfReporter
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfStatisticer
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This is the main Java method that starts the program and receives input
arguments.
- main(String[]) - Static method in class uni.bielefeld.cmg.sparkhit.main.MainOfVariantCaller
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This is the main Java method that starts the program and receives input
arguments.
- MainOfChisquareTester - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit chi-square test.
- MainOfChisquareTester() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfChisquareTester
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- MainOfCluster - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-cluster.
- MainOfCluster() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfCluster
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- MainOfConverter - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-converter.
- MainOfConverter() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfConverter
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- MainOfCorrelationer - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-correlationer.
- MainOfCorrelationer() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfCorrelationer
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- MainOfDecompresser - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-decompresser.
- MainOfDecompresser() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfDecompresser
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- MainOfMapper - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-mapper.
- MainOfMapper() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfMapper
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- MainOfParallelizer - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-parallelizer.
- MainOfParallelizer() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfParallelizer
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- MainOfPiper - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-piper.
- MainOfPiper() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfPiper
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- MainOfReductioner - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-reductioner.
- MainOfReductioner() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfReductioner
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- MainOfRegressioner - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-regressioner.
- MainOfRegressioner() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfRegressioner
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- MainOfReporter - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-reporter.
- MainOfReporter() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfReporter
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- MainOfStatisticer - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-statisticer.
- MainOfStatisticer() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfStatisticer
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- MainOfVariantCaller - Class in uni.bielefeld.cmg.sparkhit.main
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Main Java method specified in the Manifest file for running
Sparkhit-statisticer.
- MainOfVariantCaller() - Constructor for class uni.bielefeld.cmg.sparkhit.main.MainOfVariantCaller
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- maskRepeat - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- mat - Variable in class uni.bielefeld.cmg.sparkhit.pipeline.BatchAlignPipe
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- matrix - Variable in class uni.bielefeld.cmg.sparkhit.matrix.ScoreMatrix
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- maxBlockLength - Variable in class uni.bielefeld.cmg.sparkhit.struct.AlignmentParameter
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- maximumKmerNum - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- maxReadLength - Variable in class uni.bielefeld.cmg.sparkhit.struct.AlignmentParameter
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- maxReadSize - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- maxTrys - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- mergeRefBlockList - Variable in class uni.bielefeld.cmg.sparkhit.struct.AlignmentParameter
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- mightyName - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- minor - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- minReadSize - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- model - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam
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- mRefBlockNtBit - Variable in class uni.bielefeld.cmg.sparkhit.struct.AlignmentParameter
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