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E

effectiveReadLength(int, int, double) - Static method in class uni.bielefeld.cmg.sparkhit.algorithm.Arithmetic

This method calculates the effective read length for E-value test.

effectiveRefLength(long, int, int, double) - Static method in class uni.bielefeld.cmg.sparkhit.algorithm.Arithmetic

This method calculates the effective reference length for E-value test.

end - Variable in class uni.bielefeld.cmg.sparkhit.struct.Block

end - Variable in class uni.bielefeld.cmg.sparkhit.struct.CandidateBlock

end - Variable in class uni.bielefeld.cmg.sparkhit.struct.Qgram

endFirst - Variable in class uni.bielefeld.cmg.sparkhit.struct.AlignmentParameter

endSecond - Variable in class uni.bielefeld.cmg.sparkhit.struct.AlignmentParameter

eValue - Variable in class uni.bielefeld.cmg.sparkhit.util.DefaultParam

expectedHSPLength(double, int, long, double) - Static method in class uni.bielefeld.cmg.sparkhit.algorithm.Arithmetic

This method calculates the high-scoring segment pairs (HSP) length.

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